UGC1O0001H22 - Details

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Direct telomere:

Sequence: 605

0001 TTAAAGCTAA AATAAGGTGA TATCTGACAG TGATAATTTA ATCAATATAA TTTTACTTTA TAATATACTT TACAATTATG GAAAACTCAG ATAGTATGTA

0101 AATAGATACC ACCACTGATC AAAACACAGA TGTGGACATG AATATCTAAC AAGAAGAGGA AGAGAAGCAA AAGAACTCAA TACAAGACTT ACTTATTCTA

0201 GTAAAATCAT CTCAGAACCA AAACGGACTC AGACACAACG ATTATGGCAG ATATCATAAG TATTGCATTC GCAAGATTTA TCGCATGAGG AAATCACTCA

0301 AATTCACACA AGGCAGGAAG CAATACTCCA AGAAGTTGGT TACTCCAGCA GAAGCATCCA GGAACAATAA GTATCTGTTA TTAGTGATAT TCAAGTGCGA

0401 GGCAAACTGG GCCTCAGCTA TGTAGATGAA GCAAGTAATT AGTGGATAAG GTGCAGCTCA AGCCAAAGCA AGTTAAGACC CAAATCTTTA ATCTTTGTTC

0501 AACAGGAATC CAAACAGAGT TAAATATCAT GCTAGAAAGA GATTACAAAA GGCATATGCC ACTGCTAAAG ATTTGTAAAA GGTTGCCAGT GAATCACTTG

0601 ATGGA

Blast hits:


>gi|26328771|dbj|BAC28124.1| unnamed protein product [Mus musculus]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
35.51 138 88 4 186 596 60 175 5.4e-015 82.03 Frame: 3 +


>gi|12230640|sp|Q9UHB9|SR68_HUMAN Signal recognition particle 68 kDa protein (SRP68)
>gi|6690741|gb|AAF24308.1|AF195951_1 signal recognition particle 68 [Homo sapiens]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
35.51 138 88 4 186 596 53 168 5.4e-015 82.03 Frame: 3 +


>gi|24497620|ref|NP_055045.2| signal recognition particle 68kDa [Homo sapiens]
>gi|22760309|dbj|BAC11145.1| unnamed protein product [Homo sapiens]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
35.51 138 88 4 186 596 61 176 5.4e-015 82.03 Frame: 3 +


>gi|18044248|gb|AAH20238.1|AAH20238 Unknown (protein for MGC:31966) [Homo sapiens]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
35.51 138 88 4 186 596 61 176 5.4e-015 82.03 Frame: 3 +


>gi|134889|sp|Q00004|SR68_CANFA Signal recognition particle 68 kDa protein (SRP68)
>gi|227342|prf||1702226A SRP68 protein

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
34.78 138 89 4 186 596 58 173 1.2e-014 80.88 Frame: 3 +


>gi|7513444|pir||A58947 signal recognition particle 68K protein - dog
>gi|932|emb|CAA37773.1| 68kDA subunit of signal recognition particle [Canis familiaris]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
34.78 138 89 4 186 596 52 167 1.2e-014 80.88 Frame: 3 +


>gi|18424534|ref|NP_568947.1| signal recognition particle - like protein; protein id: At5g61970.1, supported by cDNA: gi_15293136, supported by cDNA: gi_19310612 [Arabidopsis thaliana]
>gi|9758397|dbj|BAB08884.1| signal recognition particle 68kD protein-like [Arabidopsis thaliana]
>gi|15293137|gb|AAK93679.1| putative signal recognition particle protein [Arabidopsis thaliana]
>gi|19310613|gb|AAL85037.1| putative signal recognition particle protein [Arabidopsis thaliana]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
40.22 92 55 1 186 461 31 121 6e-014 78.57 Frame: 3 +


>gi|17561446|ref|NP_506083.1| Signal recognition particle 68kD (70.6 kD) [Caenorhabditis elegans]
>gi|12230634|sp|Q20822|SR68_CAEEL Probable signal recognition particle 68 kDa protein (SRP68)
>gi|7504275|pir||T22716 hypothetical protein F55C5.8 - Caenorhabditis elegans
>gi|3947567|emb|CAB01573.1| Hypothetical protein F55C5.8 [Caenorhabditis elegans]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
33.12 160 101 2 135 596 4 145 3e-013 76.26 Frame: 3 +


>gi|21291596|gb|EAA03741.1| agCP14694 [Anopheles gambiae str. PEST]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
30.12 166 111 6 120 602 22 163 1.2e-011 70.86 Frame: 3 +


>gi|21291566|gb|EAA03711.1| ebiP6314 [Anopheles gambiae str. PEST]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
32.17 143 92 5 189 602 1 122 3.6e-011 69.32 Frame: 3 +


>gi|21355591|ref|NP_648273.1| CG5064-PA [Drosophila melanogaster]
>gi|12230644|sp|Q9VSS2|SR68_DROME Probable signal recognition particle 68 kDa protein (SRP68)
>gi|7295013|gb|AAF50341.1| CG5064-PA [Drosophila melanogaster]
>gi|16198221|gb|AAL13927.1| LD41750p [Drosophila melanogaster]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
29.93 147 99 4 162 590 24 149 4.7e-011 68.94 Frame: 3 +


>gi|27690562|ref|XP_221130.1| similar to Signal recognition particle 68 kDa protein (SRP68) [Rattus norvegicus]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
47.17 53 27 1 189 344 38 90 7.8e-006 51.6 Frame: 3 +


>gi|2126661|pir||S61075 M protein precursor - Streptococcus pyogenes (serotype M31) (fragment)
>gi|1235811|gb|AAA99559.1| emml gene product

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
27.94 68 49 1 138 341 21 85 0.199 36.96 Frame: 3 +


>gi|15233570|ref|NP_193212.1| centromere protein homolog; protein id: At4g14760.1 [Arabidopsis thaliana]
>gi|7488075|pir||E71410 probable centromere protein - Arabidopsis thaliana
>gi|2244833|emb|CAB10255.1| centromere protein homolog [Arabidopsis thaliana]
>gi|7268182|emb|CAB78518.1| centromere protein homolog [Arabidopsis thaliana]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
27.63 76 55 0 146 373 1138 1213 0.34 36.19 Frame: 2 +


>gi|23509540|ref|NP_702207.1| hypothetical protein [Plasmodium falciparum 3D7]
>gi|23497387|gb|AAN36931.1|AE014821_18 hypothetical protein [Plasmodium falciparum 3D7]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
24.35 115 79 1 54 374 1738 1852 0.444 35.81 Frame: 3 +


>gi|17232403|ref|NP_488951.1| unknown protein [Nostoc sp. PCC 7120]
>gi|25534074|pir||AG2419 hypothetical protein alr4911 [imported] - Nostoc sp. (strain PCC 7120)
>gi|17134049|dbj|BAB76610.1| ORF_ID:alr4911~unknown protein [Nostoc sp. PCC 7120]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
29.79 94 61 2 134 400 181 265 0.444 35.81 Frame: 2 +


>gi|15078861|ref|NP_149611.1| 148R [Invertebrate iridescent virus 6]
>gi|7461110|pir||T03089 conserved hypothetical protein 074R - Chilo iridescent virus
>gi|2738436|gb|AAB94463.1| 148R [Chilo iridescent virus]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
23.48 132 100 4 5 397 156 264 0.579 35.42 Frame: 2 +


>gi|23490242|gb|EAA22067.1| Drosophila melanogaster CG15040 gene product [Plasmodium yoelii yoelii]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
25.77 97 72 3 84 374 365 447 0.988 34.65 Frame: 3 +


>gi|6678121|ref|NP_033293.1| salivary protein 1 [Mus musculus]
>gi|111006|pir||A30305 submandibular gland protein (spot 1) precursor - mouse
>gi|201045|gb|AAA40132.1| salivary protein 1 precursor

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
39.53 43 26 1 81 209 85 126 0.988 34.65 Frame: 3 +


>gi|134459|sp|P02815|SG16_MOUSE 16.5 KD SUBMANDIBULAR GLAND GLYCOPROTEIN PRECURSOR (SALIVARY PROTEIN 1)
>gi|72191|pir||WMMS16 submandibular gland 16.5K protein - mouse
>gi|51368|emb|CAA25098.1| put. secreted sub-maxillary glycoprotein [Mus musculus]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
39.53 43 26 1 81 209 85 126 0.988 34.65 Frame: 3 +


UGC1O0001H22 - Details

go to the other reading

Direct telomere:

Sequence: 581

0001 AAAATGCAAA ATTATTAAGT AGAATTTTGT GATAATAATT TATTCAAAAG AAATTTAAAT TGGAATAAAA GTAGAGGGGT GATCCGAGAA TTGAACTCGG

0101 GACCTCTCGC ACCCTAAGCG AGAATCATAC CACTAGACCA AACACCCATG TTAGAGGTCT ACTGCTTTTT CCTGCCTATA TGCTATCGAT CAAGAACTTC

0201 AAAGCTAGTT CTAAAGTAAT CTGAGAATAA AGATTGATTT TTGTGAAAAT ATATAAATTC AGGATTATTT GATTGTAGAG AAATCATGAA GGGCAAAGAG

0301 ATATAACAGT GAATATTAAT TTGAGAATAA GATACTTATT TAATCAAACA CGGACAATAA ACTAAATCAT GAACGTCCAA AGAAGCCTGA GATCTTAGAG

0401 AACAGACCTC CCTGTACTTT ATATTTAGCA ATTGACTCAT CCAAATCTGG ATAGGTTAGG TAGGCTCCTG CAAGATCGAA GAACTGAGGA GTAGCTGGGA

0501 CTGACTAGAA TTTTGGGATT GGGTTTACAA GCTTGAATTA TTTACTGATC TTTAGTTTAT CTACTTCAAT GGCCTTCTTA T

Blast hits:


>gi|13811958|ref|NP_113087.1| hypothetical protein [Guillardia theta]
>gi|25396900|pir||G90120 hypothetical protein orf176 [imported] - Guillardia theta nucleomorph
>gi|13794283|gb|AAK39660.1|AF083031_17 hypothetical protein [Guillardia theta]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
90.48 21 2 0 75 137 21 41 0.007 41.59 Frame: 3 +


>gi|7511285|pir||T27979 hypothetical protein ZK678.4 - Caenorhabditis elegans

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
54.05 37 13 1 149 51 1 37 0.062 38.51 Frame: 3 -


>gi|21291596|gb|EAA03741.1| agCP14694 [Anopheles gambiae str. PEST]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
37.29 59 32 2 537 376 563 618 0.062 38.51 Frame: 1 -


>gi|21291566|gb|EAA03711.1| ebiP6314 [Anopheles gambiae str. PEST]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
37.29 59 32 2 537 376 522 577 0.062 38.51 Frame: 1 -


>gi|15218782|ref|NP_174193.1| hypothetical protein; protein id: At1g28760.1 [Arabidopsis thaliana]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
44.19 43 23 1 221 96 2 44 0.081 38.12 Frame: 3 -


>gi|7493881|pir||S78737 protein YOL013w - yeast (Saccharomyces cerevisiae) delta remnant

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
48.72 39 10 1 146 60 18 56 0.307 36.19 Frame: 3 -


>gi|4584100|emb|CAB40588.1| hypothetical protein [Bacillus cereus]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
35.56 45 29 0 534 400 61 105 0.685 35.04 Frame: 1 -


>gi|17561446|ref|NP_506083.1| Signal recognition particle 68kD (70.6 kD) [Caenorhabditis elegans]
>gi|12230634|sp|Q20822|SR68_CAEEL Probable signal recognition particle 68 kDa protein (SRP68)
>gi|7504275|pir||T22716 hypothetical protein F55C5.8 - Caenorhabditis elegans
>gi|3947567|emb|CAB01573.1| Hypothetical protein F55C5.8 [Caenorhabditis elegans]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
36.96 46 29 0 561 424 526 571 0.685 35.04 Frame: 1 -


>gi|1401206|gb|AAD05367.1| pre-mRNA splicing factor PRP 6 homolog [Chlorarachnion CCMP621]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
20.59 170 123 3 520 47 480 645 0.894 34.65 Frame: 2 -


>gi|21400783|ref|NP_656768.1| IU_nuc_hydro, Inosine-uridine preferring nucleoside hydrolase [Bacillus anthracis A2012]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
33.33 45 30 0 534 400 111 155 0.894 34.65 Frame: 1 -