UGC1O0001O16 - Details

Direct telomere:

CCCCAAAACCCCAAAACCCC

Complementary telomere:

GGGGTTTTGGGG

Sequence: 584

0001 ATTAAGCAGA ATCGATATAA AATAGTAAAA TGCTAATAAA TAATAATTGA TAAAATAGTA TTAACTCTAA AAAGAATAAA AAGATATCCG AACACCCGGA

0101 ATCGAACCAG GGACCGCCCG ATAACTGCGT ATCCTCTACA GTCGGGCGCT CTGCCATCTG AGCTATGTTC GGAAGTCATT AACTTACCAC ATATTTTCTC

0201 TTATAAAAGG TTCCATCAGG TGATATTTTC ACAAATTGTA GAAGGTGTAA TATCAGTTCC AGAGTGAGTA GAGAGATGAA TTTTGAAGGA AAGTATTTTC

0301 GCAGATCACT TTAAAAACTT TAAGACAGGG AGCATCTTGA ATTATTTATA GGTTTGTTGG CTATCATAGC ACTACTTCTA CTACTTTTAG ACTTTGATAA

0401 ACAGAAATAT AATCTCAGAG ATTGCAAAGT GATAAACAGG AATACAACTC TAGTCCAAGA CATAATCTCA TTCCAGCATA AATTTGTGAG AATACTAAAA

0501 GAGAGTGTTA GTGGCTCAAG AATTAAACTC TATCAAATAT TTTATTATCG ATTTAATTTG TTTATATTTT ATACTTTTAA AACT

Blast hits:

>gi|21242271|ref|NP_641853.1| heat-inducible transcriptional repressor [Xanthomonas axonopodis pv. citri str. 306]
>gi|24211778|sp|Q8PMB2|HRCA_XANAC Heat-inducible transcription repressor hrcA
>gi|21107698|gb|AAM36389.1| heat-inducible transcriptional repressor [Xanthomonas axonopodis pv. citri str. 306]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
36.67 60 38 1 275 96 29 82 0.063 38.51 Frame: 3 -

>gi|24211776|sp|Q8PAL1|HRCA_XANCP Heat-inducible transcription repressor hrcA

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
36.67 60 38 1 275 96 29 82 0.082 38.12 Frame: 3 -

>gi|13879040|gb|AAG53934.2|AF302775_1 HrcA [Xanthomonas campestris pv. campestris]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
36.67 60 38 1 275 96 36 89 0.082 38.12 Frame: 3 -

>gi|21230927|ref|NP_636844.1| heat-inducible transcriptional repressor [Xanthomonas campestris pv. campestris str. ATCC 33913]
>gi|21112541|gb|AAM40768.1| heat-inducible transcriptional repressor [Xanthomonas campestris pv. campestris str. ATCC 33913]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
36.67 60 38 1 275 96 55 108 0.082 38.12 Frame: 3 -

>gi|15604025|ref|NP_220540.1| unknown [Rickettsia prowazekii]
>gi|7467668|pir||B71725 hypothetical protein RP149 - Rickettsia prowazekii
>gi|3860716|emb|CAA14617.1| unknown [Rickettsia prowazekii]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
30 80 52 2 496 269 22 97 0.311 36.19 Frame: 2 -

>gi|23484801|gb|EAA20007.1| hypothetical protein [Plasmodium yoelii yoelii]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
27.86 140 87 6 207 584 289 423 0.311 36.19 Frame: 3 +

>gi|23507947|ref|NP_700617.1| ADA2-like protein [Plasmodium falciparum 3D7]
>gi|23495008|gb|AAN35341.1|AE014831_17 ADA2-like protein [Plasmodium falciparum 3D7]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
28.92 83 57 1 23 265 1373 1455 0.694 35.04 Frame: 2 +

>gi|5924306|gb|AAD56544.1|AF184590_1 ADA2-like protein [Plasmodium falciparum]

% id alignment lenght mismatches gap openings q start q end s start s end e-value bit score reading frame
28.92 83 57 1 23 265 506 588 0.694 35.04 Frame: 2 +