The <mds_ies_db> currently contains genetic information for the following ciliate species:

Oxytricha trifallax

  • Macronucleus

    Contigs
    2-Telomere:
    17,198
    1-Telomere:
    4,230
    0-Telomere:
    1,032

    Total:
    22,460
    Genes
    MAC-Limited:
    25,933

    Total:
    27,638
    MDS
    Observed:
    278,656
    Inferred1:
    19,385

    Total:
    298,041
  • Micronucleus

    Contigs
    Total:
    25,720
    Genes
    MIC-Limited:
    810

    Total:
    5,889
    MDS
    Total:
    752,901
  • Rearrangement Maps

    Strong Maps2:
    39,128
    Weak Maps:
    247,528

    Total:
    286,656

    MAC-MIC High Scoring Pairs

    Strong HPSs3:
    302,761
    Weak HPSs:
    4,604,939

    Total:
    4,907,700

Tetrahymena thermophila

  • Macronucleus

    Contigs
    2-Telomere:
    129
    1-Telomere:
    28
    0-Telomere:
    1,000

    Total:
    1,157
    Genes
    MAC-Limited:
    9,438

    Total:
    26,996
    MDS
    Observed:
    42,388
    Inferred1:
    12,268

    Total:
    54,656
  • Micronucleus

    Contigs
    Total:
    949
    Genes
    MIC-Limited:
    --

    Total:
    25,837
    MDS
    Total:
    26,413
  • Rearrangement Maps

    Strong Maps2:
    152
    Weak Maps:
    200,937

    Total:
    201,089

    MAC-MIC High Scoring Pairs

    Strong HPSs3:
    11,347
    Weak HPSs:
    66,242,831

    Total:
    66,254,178

1A loci of the MAC genome that are unmatched to the MIC genome
2Maps from 2-telomere MAC contigs that are covered ≥30% by a corresponding MIC contig
3HPSs belonging to “Strong Maps”